Alexander S. Bayden: search on Z-Library

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1

Web application for studying the free energy of binding and protonation states of protein–ligand complexes based on HINT

Alexander S. Bayden, Micaela Fornabaio, J. Neel Scarsdale, Glen E. Kellogg

Journal:

Journal of Computer-Aided Molecular Design

Year:

2009

Language:

english

File:

PDF, 388 KB

english, 2009

2

Use of extended dimensions in global optimization

Alexander S. Bayden, Kenneth D. Jordan

Journal:

Chemical Physics Letters

Year:

2004

Language:

english

File:

PDF, 198 KB

english, 2004

3

Factors influencing protein tyrosine nitration—structure-based predictive models

Alexander S. Bayden, Vasily A. Yakovlev, Paul R. Graves, Ross B. Mikkelsen, Glen E. Kellogg

Journal:

Free Radical Biology and Medicine

Year:

2011

Language:

english

File:

PDF, 1.72 MB

english, 2011

4

Fine tuning of the active site modulates specificity in the interaction of O-acetylserine sulfhydrylase isozymes with serine acetyltransferase

Francesca Spyrakis, Paolo Felici, Alexander S. Bayden, Enea Salsi, Riccardo Miggiano, Glen E. Kellogg, Pietro Cozzini, Paul F. Cook, Andrea Mozzarelli, Barbara Campanini

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2013

Language:

english

File:

PDF, 3.02 MB

english, 2013

5

Nitration of the Tumor Suppressor Protein p53 at Tyrosine 327 Promotes p53 Oligomerization and Activation

Yakovlev, Vasily A., Bayden, Alexander S., Graves, Paul R., Kellogg, Glen E., Mikkelsen, Ross B.

Journal:

Year:

2010

Language:

english

File:

PDF, 2.97 MB

english, 2010

6

Computational Insight Concerning Catalytic Decision Points of the Transition Metal Catalyzed [2 + 2 + 1] Cyclocarbonylation Reaction of Allenes

Bayden, Alexander S., Brummond, Kay M., Jordan, Kenneth D.

Journal:

Organometallics

Year:

2006

Language:

english

File:

PDF, 151 KB

english, 2006

7

Design of O -Acetylserine Sulfhydrylase Inhibitors by Mimicking Nature

Salsi, Enea, Bayden, Alexander S., Spyrakis, Francesca, Amadasi, Alessio, Campanini, Barbara, Bettati, Stefano, Dodatko, Tetyana, Cozzini, Pietro, Kellogg, Glen E., Cook, Paul F., Roderick, Steven L.,

Journal:

Journal of Medicinal Chemistry

Year:

2010

Language:

english

File:

PDF, 4.43 MB

english, 2010

8

Evaluating Free Energies of Binding and Conservation of Crystallographic Waters Using SZMAP

Bayden, Alexander S., Moustakas, Demetri T., Joseph-McCarthy, Diane, Lamb, Michelle L.

Journal:

Journal of Chemical Information and Modeling

Year:

2015

Language:

english

File:

PDF, 2.24 MB

english, 2015

9

Rational, computer-enabled peptide drug design: principles, methods, applications and future directions

Diller, David J, Swanson, Jon, Bayden, Alexander S, Jarosinski, Mark, Audie, Joseph

Journal:

Future Medicinal Chemistry

Year:

2015

Language:

english

File:

PDF, 1.45 MB

english, 2015

10

A combined cheminformatic and bioinformatic approach to address the proteolytic stability challenge in peptide-based drug discovery

Bayden, Alexander S., Gomez, Edwin F., Audie, Joseph, Chakravorty, Dhruva K., Diller, David J.

Journal:

Year:

2015

Language:

english

File:

PDF, 690 KB

english, 2015

11

The Roles of Water in the Protein Matrix: A Largely Untapped Resource for Drug Discovery

Spyrakis, Francesca, Ahmed, Mostafa H., Bayden, Alexander S., Cozzini, Pietro, Mozzarelli, Andrea, Kellogg, Glen E.

Journal:

Journal of Medicinal Chemistry

Year:

2017

Language:

english

File:

PDF, 5.92 MB

english, 2017

12

PeptideNavigator: An interactive tool for exploring large and complex data sets generated during peptide-based drug design projects

Diller, Kyle I., Bayden, Alexander S., Audie, Joseph, Diller, David J.

Journal:

Computers in Biology and Medicine

Year:

2017

Language:

english

File:

PDF, 7.95 MB

english, 2017

13

Inhibiting IL-2 signaling and the regulatory T-cell pathway using computationally designed peptides

Price-Troska, Tammy, Yang, Zhi-Zhang, Diller, David, Bayden, Alexander, Jarosinski, Mark, Audie, Joseph, Ansell, Stephen M.

Journal:

Investigational New Drugs

Year:

2018

Language:

english

File:

PDF, 1.88 MB

english, 2018

14

Rigorous Computational and Experimental Investigations on MDM2/MDMX-Targeted Linear and Macrocyclic Peptides

Diller, David J., Swanson, Jon, Bayden, Alexander S., Brown, Chris J., Thean, Dawn, Lane, David P., Partridge, Anthony W., Sawyer, Tomi K., Audie, Joseph

Journal:

Year:

2019

File:

PDF, 5.64 MB

2019

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